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Pangenomics Analysis

Workflow Analysis

1

  • Raw reads processing (QC and trimming)

  • Genome assembly and evaluation

2

  • Genome Annotation

  • Data retrieval from the Database

  • Pan-genome profile analysis

  • Genome map

  • Core, Shell, and Cloud (using the roary pangenome pipeline)

  • Phylogenetic tree construction based on orthologous genes found by roary among the strains

3

  • Visualizations and report (Materials and Method, Results and References) including unique genes and new genes.

The workflow as we have shown you entails the steps of bioinformatics analysis to be carried out for your data and each is unique to the workflow designed for the final outcome. 

For pangenome analysis at the genome level, there are two options (Whole genome phylogenetic tree construction and A phylogenetic tree construction based on the homologous genes). We will provide any or both at your request. 

The following will be provided after the complete job is done.

  • Assembly genome sequence

  • A detailed draft of a report containing the materials and methods, results, and references

  • Visualizations (figures)

  • Technical support: A live zoom session will be held to explain and discuss the results to you. 

Get In Touch

You can book a free session with us to discuss what you want to do, your research project, and show you a demo report. We promise to deliver accurate and trusted work done.

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